PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000080.1.g00019.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 744aa    MW: 85949.6 Da    PI: 7.0047
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000080.1.g00019.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.81.4e-21121212190
                            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkw 76 
                                     ++Y ++A++ GFsvrk++s+ s + g i+kr+fvC+++g++  +kk t +++r r++ r+gC+ak+ ++ke     ++w
  FANhyb_rscf00000080.1.g00019.1 121 EYYGNFARRNGFSVRKERSRLSPQLG-IYKRDFVCYRSGFAPAKKKLTGDHHRDRKSVRCGCDAKMYLSKEVvdgVSQW 198
                                     59********************8888.*******************************************99867789* PP

                            FAR1  77 evtkleleHnHela 90 
                                      v ++++ HnHel 
  FANhyb_rscf00000080.1.g00019.1 199 FVVQFSNVHNHELL 212
                                     ************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-19121212IPR004330FAR1 DNA binding domain
PfamPF105517.6E-19345435IPR018289MULE transposase domain
PROSITE profilePS509669.817616651IPR007527Zinc finger, SWIM-type
PfamPF044341.7E-5625650IPR007527Zinc finger, SWIM-type
SMARTSM005753.7E-4626653IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    Send to blast
MRQGKLTLSF TVCSSINYRV KPIRYNGLGS MLHHGRKKRP KDKHARPINI SAAPLHNSRG  60
TRSAVEEDEQ AYKGLSSPAF TGDSEETSLA AQLVKNDTST SEAMVSPYVG MVFKNDDAAF  120
EYYGNFARRN GFSVRKERSR LSPQLGIYKR DFVCYRSGFA PAKKKLTGDH HRDRKSVRCG  180
CDAKMYLSKE VVDGVSQWFV VQFSNVHNHE LLEDDQVRLL PAYRKIREAD QERILLLSKA  240
GFPIQRIVKV LELEKGIQGG QLPFLERDVR NFVQNRKKVV QENDALITEK RENDTLELLE  300
ACKVTKEADE DFVYDFTVDE NDKVEHIAWS YGHSVEAYTM FGDAVYFDTM YQSITYGMLF  360
GAWLGIDNHG RTVFFGCVLL QDETPRSFSW ALQTFVRFMR GRWPQTIITD LDPGLRDAIT  420
SKLPDSKHVI SLWNIFPKVS SWFSVSLGSR YAEFRSELDV LYRVESTEDF ELQWNQMISI  480
YGLSTDKHIT LLHSFRASWA LCYMRGCFVA RMGTTDYLKS IEAFLKGVFS TQTCLRSFFE  540
QVGISASFQN QACREMQYMH TKTCIPIEEN ARSILTPFAF NALQHELVLA MQYAVSEMPN  600
GSCIVRHFKE IDGERLVIWI PEDEHVHCSC KEFESSGLLC RHSLRVFILK NYFHLPDKYY  660
LNRWRRETSL DFYDPQIAQN CDDEWYQHYQ CLAETLFTES SLTKERSEYV QREVTTHLTR  720
ILNEVRNMPE SEGVAMDLTF SPAG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293388.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLM5WLZ40.0M5WLZ4_PRUPE; Uncharacterized protein
STRINGVIT_00s0194g00200.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10